PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1355
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 307aa    MW: 35378.4 Da    PI: 8.8779
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1355genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.51e-1947132282
     trihelix   2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                  Wt qe+l+Li+a+r ++er  +      +k  + +W+++ ++++++g+ rs++qC++kw+nl ++ykk+++ ++++ s+s+s++p++
  Gh_D01G1355  47 WTIQETLTLITAKRLDDERRAKpstsspSKPGELRWKWIENYCWDHGCFRSQNQCNDKWDNLLRDYKKVRQYQSSH-SQSQSSHPFL 132
                  **************77777775333333468899*****************************************9.5666678875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-439111IPR009057Homeodomain-like
PROSITE profilePS500907.38739109IPR017877Myb-like domain
PfamPF138375.3E-1446138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSNPLPPPPP PSTHHHQHQP LNIITPATTS ATTMTSAPNR EYRKGNWTIQ ETLTLITAKR  60
LDDERRAKPS TSSPSKPGEL RWKWIENYCW DHGCFRSQNQ CNDKWDNLLR DYKKVRQYQS  120
SHSQSQSSHP FLSYWSMERH QRKLHNLPTN MSPEVFEALN DVLQRKLNTQ QQPHLHQPSF  180
SQSPEQLPLK TDQNPPEVDA PVTVSEESDS SETESSENLD SKTKRKKVRK IGSSIMRSAS  240
VLAQTLKSCE ENKEKRHQQV MELEQRRLQI EETRNEVNRK GITDLVAAMT NLSGAIQSLI  300
ANHYDQT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.198340.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467156.10.0PREDICTED: uncharacterized protein LOC105785591
TrEMBLA0A0D2NP590.0A0A0D2NP59_G
STRINGGLYMA20G32540.23e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.18e-47Trihelix family protein